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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86944605_86961589_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
86944605 - 86961589
Intron Length:
16985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
GPRGRNEGLLGLSVMKRILL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630