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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_869471_892325_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
869471 - 892325
Intron Length:
22855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGAGCC
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TTTACCTTACTC
Flanking Amino Acid:
STPGGAASCSRYPLRRGSSF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
60.1
40.3
Major BPS
66.4
0.41
1
59
37.6
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
30.8
-2.2
3.6
43
44.2
Minor BPS
69.3
0.58
1.6
79
36.7

Associated Gene:

Gene:
NET1
Ensembl Gene ID:
ENSAPLG00000006923
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019684
869159 - 916130
46972