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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86962441_86963663_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86962441 - 86963663
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
AATTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTCTTTGAAAT
Flanking Amino Acid:
PSSNEASGVTQLLPTAVERR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
80.8
0.69
0.8
74.2
35.5
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
60.2
0.4
1.5
79.37
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630