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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86963742_86966627_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86963742 - 86966627
Intron Length:
2886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CCTCCTTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCCTCCTTCATT
Flanking Amino Acid:
LLKPAFESLLDVDKIYPFLC
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
70.4
0.46
0.8
70.2
29.1
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
66.7
0.61
1.8
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630