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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86968104_86974344_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86968104 - 86974344
Intron Length:
6241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGCATATTAAAG
Flanking Amino Acid:
QNCGLSNEDDSVSCRRCVVV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
47.2
-0.3
1.8
51.18
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630