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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86974441_86976283_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
86974441 - 86976283
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
GTCATTGCAATC
Flanking Amino Acid:
EKIDSYDVIIRMNNGPVIGY
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
76.6
0.6
0.9
69.9
36.5
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
40.5
-0.7
2
46.88
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630