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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86976471_86977613_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86976471 - 86977613
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TTGCCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATGTAGTTATTT
Flanking Amino Acid:
LWEILGGQKISAKGFWKKPA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.9
30.5
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
78.2
0.64
0.9
72
38
Minor 5ss
40.9
-1
3
55
43.6
Minor BPS
45.5
-0.2
2.3
66.95
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630