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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86977752_86981405_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
86977752 - 86981405
Intron Length:
3654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GGTTAATTATGC
Flanking Amino Acid:
HFPTRFPKKEKPKHPTTGLI
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
42.6
-0.5
2.2
54.41
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010719
86943658 - 86983287
39630