Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_86992358_86993824_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

86992358 - 86993824

Intron Length:

1467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCAACCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCTAT

U12 Branch Point Sequence:

TCCTCCCCAACC

Flanking Amino Acid:

GKDMAPKKEKEMPVRSLRGE

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

67.1

44.6

Major BPS

56.2

0.15

1.3

54.7

42.5

Major PPT

63.5

0.3

0.9

54.7

34.1

Minor 5ss

35.7

-1.6

3.3

46.8

48.5

Minor BPS

54.6

0.12

1.9

67.5

Associated Gene:

Gene:

COL8A1

Ensembl Gene ID:

ENSAPLG00000029430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030908

86990676 - 87060383

69708

ENSAPLT00000030219

86990676 - 87060383

69708