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Intron Name: Anas_platyrhynchos_platyrhynchos_1_87019025_87060253_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

87019025 - 87060253

Intron Length:

41229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTTC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGCTCATGAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

84.2

27.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

81.9

0.72

0.7

74.4

30.8

Minor 5ss

44.8

-0.6

2.8

61.7

43.1

Minor BPS

58.1

0.33

1.8

75.06

41.5

Associated Gene:

Gene:

COL8A1

Ensembl Gene ID:

ENSAPLG00000029430

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030219

86990676 - 87060383

69708