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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87286665_87287184_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87286665 - 87287184
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTTTCT
Flanking Amino Acid:
LAAYSTTDKSAFKRSYCICF
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.5
38.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
49.1
-0.1
2.5
66.4
44.7
Minor BPS
41.5
-0.5
3.8
79.44
43

Associated Gene:

Gene:
DCBLD2
Ensembl Gene ID:
ENSAPLG00000010160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040549
87265666 - 87306091
40426