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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87287980_87289313_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87287980 - 87289313
Intron Length:
1334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
ATATCTTGACCT
Flanking Amino Acid:
NASHFSEPEFNKYCPAGCVI
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
80.6
27.4
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
43.2
-0.7
3.1
56.6
42
Minor BPS
57.8
0.32
1.7
76.16
40.3

Associated Gene:

Gene:
DCBLD2
Ensembl Gene ID:
ENSAPLG00000010160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040549
87265666 - 87306091
40426
ENSAPLT00000010602
87265666 - 87306091
40426