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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87292910_87294311_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87292910 - 87294311
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CCTTACTTACCA
Flanking Amino Acid:
GSLANNVTSKVGPLSTSLFT
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1.1
68
37.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
35
-1.7
3.2
42.4
44.3
Minor BPS
57.5
0.23
1.9
67.79
44.7

Associated Gene:

Gene:
DCBLD2
Ensembl Gene ID:
ENSAPLG00000010160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040549
87265666 - 87306091
40426
ENSAPLT00000010602
87265666 - 87306091
40426