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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87294353_87295509_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87294353 - 87295509
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACTCTGAATC
Flanking Amino Acid:
STSLFTFKTSGCYGTLGMES
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.3
0.53
0.9
72
37.9
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
55.6
0.15
1.4
61.19
38.1

Associated Gene:

Gene:
DCBLD2
Ensembl Gene ID:
ENSAPLG00000010160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040549
87265666 - 87306091
40426
ENSAPLT00000010602
87265666 - 87306091
40426