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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87301903_87302802_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
87301903 - 87302802
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCATG
5'SS Class:
weak_major
3'SS Sequence:
TAATGGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CACCACTTAATT
Flanking Amino Acid:
NTTVTPSVTKDVALAAVLVP
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
63.8
47.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.4
0.48
1
66.3
44.7
Minor 5ss
47.5
-0.2
2.9
66.1
45
Minor BPS
57.6
0.32
1.6
67.54
43.2

Associated Gene:

Gene:
DCBLD2
Ensembl Gene ID:
ENSAPLG00000010160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040549
87265666 - 87306091
40426
ENSAPLT00000010602
87265666 - 87306091
40426