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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87326169_87327321_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
87326169 - 87327321
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACATCCTTGTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GAAACCTTAACA
Flanking Amino Acid:
AGNYTFRISYNFPVTKFKGK
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
67.5
0.39
1
65.9
40.1
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
71.9
0.68
1.3
71.86
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010780
87322523 - 87334759
12237