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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87328656_87330768_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87328656 - 87330768
Intron Length:
2113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTATTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TATTCCCTACAG
Flanking Amino Acid:
CGAIANSMFNDTIDLFYNFN
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.1
0.61
0.9
69.9
36.5
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
49.2
-0.1
2.1
62.95
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010780
87322523 - 87334759
12237