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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87332366_87333609_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87332366 - 87333609
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTATCCTTGAAT
Flanking Amino Acid:
IDFTLKEDMLGDVFMYYGLQ
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
68.8
0.42
0.9
59.2
40.8
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
77.7
0.95
1.3
89.54
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010780
87322523 - 87334759
12237