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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87333721_87334570_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
87333721 - 87334570
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCA|GCAAACAGC
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTATTGTAATC
Flanking Amino Acid:
LSVGICLILSINYSDKCSDC
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.4
58.3
43.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.3
0.53
1
68.9
36.6
Minor 5ss
31
-2.2
4
48
42.1
Minor BPS
53.2
0.08
2
69.89
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010337
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010780
87322523 - 87334759
12237