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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87336186_87338890_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
87336186 - 87338890
Intron Length:
2705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTCTTTGATT
Flanking Amino Acid:
KLRRMMDIPEIKKETIDLLE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.2
68.3
39.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.9
0.9
0.7
89
28.1
Minor 5ss
50.2
0.01
2.9
72.7
44.5
Minor BPS
76.9
0.93
1.1
86.34
34.1

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684