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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87338980_87340596_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87338980 - 87340596
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGGTAATAAAAT
Flanking Amino Acid:
PGRIKALVEQDGLCLNSTKY
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80
0.68
0.8
77.9
35.9
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
44.8
-0.3
2.1
64.5
45

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684