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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87340685_87341647_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87340685 - 87341647
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTTTTCAAAT
Flanking Amino Acid:
VLKLFAKHIKIKEQINMLEK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
68.3
0.41
1
68.8
36.1
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
52.3
0.15
1.7
68.37
43

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684