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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87341709_87343127_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87341709 - 87343127
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCGA
5'SS Class:
major
3'SS Sequence:
TTTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
SSALRSLELIKSMTAFKGDC
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
64.4
41.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
82.1
34.6
Minor 5ss
41.4
-1
2.8
49.5
41.1
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684