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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87344053_87346998_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87344053 - 87346998
Intron Length:
2946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTCTCCTTTATG
Flanking Amino Acid:
VIEIEELTLSDSCFLPANDL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
67.4
0.4
1.7
71.23
42.1

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684