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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87347129_87349743_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87347129 - 87349743
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAACG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CCATACTTAACC
Flanking Amino Acid:
SAVKAKKRKKKKISDVLEKS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.8
39.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
79.2
0.66
0.8
76.9
37.3
Minor 5ss
39.9
-1.1
2.8
49.7
46.3
Minor BPS
65.9
0.48
1.6
68.13
43.1

Associated Gene:

Gene:
CMSS1
Ensembl Gene ID:
ENSAPLG00000010542
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011062
87336102 - 87349785
13684