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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8736112_8743524_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8736112 - 8743524
Intron Length:
7413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGAGTAA
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ATTGAATTATTT
Flanking Amino Acid:
LDRVSDNYREIHWPSTPLQA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
61.2
35.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
28.6
-2.5
3.5
36.6
47.9
Minor BPS
46.4
-0.1
2
68.5
42.4

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396