Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8755361_8769032_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8755361 - 8769032

Intron Length:

13672

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

TTTTTTTTAAAG

Flanking Amino Acid:

PKEHTPTKHKDHLFQLESHK

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

75.1

33.1

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

87.3

0.84

0.9

89.9

23.6

Minor 5ss

-1.8

3.1

45.2

42.8

Minor BPS

72.6

0.57

1.4

75.95

35.7

Associated Gene:

Gene:

SEMA3E

Ensembl Gene ID:

ENSAPLG00000013554

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043687

8659024 - 8806419

147396

ENSAPLT00000019752

8659024 - 8806419

147396