About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87561593_87562878_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87561593 - 87562878
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTCCCCTAACA
Flanking Amino Acid:
SKTCLQSGGRRVHSNSLNGS
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.8
0.56
0.8
69.6
29.6
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
67.2
0.54
1.7
77.88
38.5

Associated Gene:

Gene:
FILIP1L
Ensembl Gene ID:
ENSAPLG00000010761
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011212
87530462 - 87563001
32540