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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87566711_87573295_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87566711 - 87573295
Intron Length:
6585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
ATCATTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
EGEEAPPPGCWEKDLAEALE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.4
43.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.6
0.51
0.9
66.9
38.5
Minor 5ss
37.9
-1.4
3
43.6
46
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936