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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87573408_87573638_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87573408 - 87573638
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
PDDLRAKVWKIALNVVGKGD
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936