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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87582435_87582981_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87582435 - 87582981
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CTTCATTTAACT
Flanking Amino Acid:
CSKTPASFRKDNHSLFGSSL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.2
0.57
0.9
75
34.6
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
68.3
0.65
1.5
82.33
38.9

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936