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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87584189_87586002_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87584189 - 87586002
Intron Length:
1814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
GTGCATTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
TTAGTGTTAAGC
Flanking Amino Acid:
STAFHLDSDLMLQNPSEFAQ
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
68.3
42.1
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
68.2
0.41
1
61
39.9
Minor 5ss
41.9
-0.9
2.5
49.4
40.9
Minor BPS
46.7
-0.2
2.3
62.02
43.8

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936