Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87589237_87592338_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87589237 - 87592338

Intron Length:

3102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

TCATTGCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CCTCTCCTACCC

Flanking Amino Acid:

IPWPDRASLERHVSSSDRVG

Intron Amino Acid Position:

529

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

70.1

43.1

Major BPS

100

1.24

0.5

100

Major PPT

0.41

62.5

38.4

Minor 5ss

47.9

-0.2

2.8

65.4

45.7

Minor BPS

45.8

-0.3

1.9

55.63

42.9

Associated Gene:

Gene:

TBC1D23

Ensembl Gene ID:

ENSAPLG00000010813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011310

87566461 - 87596396

29936