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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87592428_87593875_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87592428 - 87593875
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
CTCTTCAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
SIADEEEYDTDEIDSSSMSD
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.1
52.7
40.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.1
0.3
1
59.7
34.6
Minor 5ss
34.5
-1.8
3.5
42.8
46.7
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936