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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87594012_87595158_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87594012 - 87595158
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGAA
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCCCTTCAAG
Flanking Amino Acid:
EVKENGHMFPSHLLVTATHM
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.3
0.55
1
71.9
33
Minor 5ss
27.5
-2.6
3.6
37.7
47
Minor BPS
59.2
0.14
2
70.4
42.3

Associated Gene:

Gene:
TBC1D23
Ensembl Gene ID:
ENSAPLG00000010813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011310
87566461 - 87596396
29936