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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87600787_87601500_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87600787 - 87601500
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
TTTTCTGCCATT
Flanking Amino Acid:
MCSPTAQDFRLALIQLH
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
72.1
0.5
0.9
71.6
34.2
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
45.8
-0.2
2.5
75.4
42.3

Associated Gene:

Gene:
NIT2
Ensembl Gene ID:
ENSAPLG00000011598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012141
87600765 - 87608611
7847