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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87603321_87604592_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87603321 - 87604592
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATTCTTAATA
Flanking Amino Acid:
DGAMLAKHRKIHLFDIDIPG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.4
0.62
0.9
70
39.2
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
76.7
0.83
1.1
77.14
33.3

Associated Gene:

Gene:
NIT2
Ensembl Gene ID:
ENSAPLG00000011598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012141
87600765 - 87608611
7847