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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87605736_87606199_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87605736 - 87606199
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TCTTTTAACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
AELAQIYGQNGCQLLIYPGA
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.1
0.36
1.1
68.1
35.7
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
NIT2
Ensembl Gene ID:
ENSAPLG00000011598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012141
87600765 - 87608611
7847