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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87606279_87606911_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87606279 - 87606911
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCTGTGAATA
Flanking Amino Acid:
PAHWELLQRGRAVDNQVYVA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.7
35.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
69.2
0.43
1
62.1
42.5
Minor 5ss
34.2
-1.8
2.9
42.9
43.6
Minor BPS
49.6
-0
2.1
69.18
37.3

Associated Gene:

Gene:
NIT2
Ensembl Gene ID:
ENSAPLG00000011598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012141
87600765 - 87608611
7847