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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87607011_87608004_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87607011 - 87608004
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCTTCATTT
Flanking Amino Acid:
AWGHSTVVNPWGEVIAKAGA
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
80.2
31.4
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
56.9
0.3
1.8
76.79
40.3

Associated Gene:

Gene:
NIT2
Ensembl Gene ID:
ENSAPLG00000011598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012141
87600765 - 87608611
7847