Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87645708_87647784_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87645708 - 87647784

Intron Length:

2077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCACTTTTAATT

Flanking Amino Acid:

HFKSKRSVSLQPEGMKERRE

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.9

35.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.2

0.68

0.8

77.7

31.1

Minor 5ss

33.8

-1.8

38.1

42.1

Minor BPS

65.2

0.56

1.2

73.31

38.2

Associated Gene:

Gene:

LNP1

Ensembl Gene ID:

ENSAPLG00000012057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012540

87639366 - 87647967

8602