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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87677671_87679100_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87677671 - 87679100
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATATGCATGACA
Flanking Amino Acid:
ILAVNYTIVSWAVRSKIKQS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
49.7
-0
2.1
66.64
39.3

Associated Gene:

Gene:
TMEM45A
Ensembl Gene ID:
ENSAPLG00000012089
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012598
87671551 - 87680349
8799