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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8769127_8779131_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8769127 - 8779131
Intron Length:
10005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGATC
5'SS Class:
major
3'SS Sequence:
GTATGGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTTTGTTTAATG
Flanking Amino Acid:
PSSSFTSILIGGELFTGLYS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
71.5
38.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
70
0.45
1
62.1
44.2
Minor 5ss
37
-1.5
3.3
49
41.5
Minor BPS
62
0.24
1.8
67.55
40.8

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396