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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87695720_87696467_F

Intron Information:

Intron Rank:
134359
Intron Class:
major
Intron Phase:
Intron Coordinates:
87695720 - 87696467
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTCA
5'SS Class:
major
3'SS Sequence:
TATTTCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCCCCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.6
39.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77
0.61
1
71.6
38.1
Minor 5ss
49.7
-0
2.5
66
45
Minor BPS
49.5
-0
2.1
71.38
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030330
87695101 - 87696639
1539