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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87699359_87701395_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87699359 - 87701395
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAATCCCTATTT
Flanking Amino Acid:
SGVEIAFNPKYNTSKFLLHD
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.8
0.63
0.8
73
30.7
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
55
0.24
1.9
75.13
41.4

Associated Gene:

Gene:
ADGRG7
Ensembl Gene ID:
ENSAPLG00000012118
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012629
87696646 - 87709853
13208