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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87702977_87704715_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87702977 - 87704715
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCTCTTAAAT
Flanking Amino Acid:
VITILFQIFTRKTRKSSVTW
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
71.7
0.49
0.9
67.8
32.6
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
77.3
0.93
1.3
90.72
32

Associated Gene:

Gene:
ADGRG7
Ensembl Gene ID:
ENSAPLG00000012118
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012629
87696646 - 87709853
13208