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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87712499_87717955_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87712499 - 87717955
Intron Length:
5457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
TTGTTGCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTAAAACA
Flanking Amino Acid:
PWQPRGAPAEGSVGDKGATM
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.1
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.7
0.56
1
70
40.3
Minor 5ss
23.9
-3
3
20.9
37.4
Minor BPS
62
0.37
1.9
80.03
36.1

Associated Gene:

Gene:
TFG
Ensembl Gene ID:
ENSAPLG00000012259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028115
87712359 - 87732056
19698