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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87721138_87722051_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87721138 - 87722051
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ACAGCCTTAAAT
Flanking Amino Acid:
CSRILKLTLFVNGQPRPLES
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
63.4
0.5
1.6
72.58
43.9

Associated Gene:

Gene:
TFG
Ensembl Gene ID:
ENSAPLG00000012259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034116
87714431 - 87732056
17626
ENSAPLT00000028115
87712359 - 87732056
19698
ENSAPLT00000012792
87714431 - 87732056
17626