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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87722199_87723258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87722199 - 87723258
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTCAAGAATT
Flanking Amino Acid:
PGVSTNLPESDAVDGREEKP
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.8
45.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.7
0.8
0.7
81.4
30.6
Minor 5ss
38.5
-1.3
3.2
48.4
42.9
Minor BPS
49.7
0.05
2
75.26
41.3

Associated Gene:

Gene:
TFG
Ensembl Gene ID:
ENSAPLG00000012259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034116
87714431 - 87732056
17626
ENSAPLT00000028115
87712359 - 87732056
19698
ENSAPLT00000012792
87714431 - 87732056
17626