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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87723427_87725649_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87723427 - 87725649
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCATTTAATG
Flanking Amino Acid:
AFGLTDDQVSGPPSAPAEER
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.9
0.56
0.8
66.4
35.7
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
64.3
0.31
1.5
69.74
37.7

Associated Gene:

Gene:
TFG
Ensembl Gene ID:
ENSAPLG00000012259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034116
87714431 - 87732056
17626
ENSAPLT00000028115
87712359 - 87732056
19698
ENSAPLT00000012792
87714431 - 87732056
17626